* indicates co-first authorship

Preprints

8

R. Schenck, G. Brosula, J. West, S. Leedham, D. Shibata, A. Anderson, 2021, "Gattaca: Base pair resolution mutation tracking for somatic evolution studies using agent-based models." (preprint)


7

S. Prabhakaran, C. Gatenbee, M. Robertson-Tessi, J. West, A. Beg, J. Gray, S. Antonia, R. Gatenby, A. Anderson, 2021, "Mistic: an open-source multiplexed image t-SNE viewer." (preprint)


6

G. Kimmel, J. West, M. Damaghi, A. Anderson, P. Altrock, 2021, "Local contact inhibition leads to universal principles of cell population growth." (preprint)


5

C. Gatenbee, A. Baker, R. Schenck, M. Strobl, J. West, M. Neves, S. Hasan, E. Lakatos, P. Martinez, W. Cross, M. Jansen, M. Rodriguez-Justo, C. Whelan, A. Sottoriva, S. Leedham, M. Robertson-Tessi, T. Graham, A. Anderson, 2021, "Immunosuppressive niche engineering at the onset of human colorectal cancer." (preprint)


4

M. Strobl, J. Gallaher, J. West, M. Robertson-Tessi, P. Maini, A. Anderson, 2020, "Spatial structure impacts adaptive therapy by shaping intra-tumoral competition." (preprint)


3

J. West, M. Strobl, C. Armagost, R. Miles, A. Marusyk, A.Anderson, 2020, "Antifragile Therapy." (preprint)


2

C. Gatenbee, J. West*, M. Robertson-Tessi, A. Baker, N. Guljar, T. Graham, A. Anderson, 2018, "Macrophage-mediated immunoediting drives ductal carcinoma evolution: Space is the game changer." (preprint)


1

R. Schenck, E. Kim, R. Bravo, J. West, D. Shibata, A. Anderson, 2019, "How Homeostasis Limits Keratinocyte Evolution." (preprint)


Publications

14

J. West, R. Schenck, C. Gatenbee, M. Roberston-Tessi, A. Anderson, 2021, "Normal tissue architecture determines the evolutionary course of cancer." Nature Communications. (open-access publication)


13

M. Damaghi, J. West,M. Robertson-Tessi, Liping Xu, M. Ferrall-Fairbanks, P. Stewart, E. Persi, B. Fridley, P. Altrock, R. Gatenby, P. Sims, A. Anderson, R. Gillies, 2020, "The Harsh Microenvironment in Early Breast Cancer Selects for a Warburg Phenotype." Proceedings of the National Academy of Sciences. (full publication) (preprint)


12

J. West, Yongqian Ma, Artem Kaznatcheev, A. Anderson, 2020, "IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations." Bioinformatics. (publication)


11

M. Strobl, J. West, Y. Viossat, M. Damaghi, M. Robertson-Tessi, J. Brown, R. Gatenby, P. Maini, A. Anderson, 2020, "Turnover modulates the need for a cost of resistance in adaptive therapy." Cancer Research. (publication)


10

J. West, L. You, J. Zhang, R.A. Gatenby, J. Brown, P.K. Newton, A. Anderson, 2020, "Towards multi-drug adaptive therapy." Cancer Research. (publication)


9

R. Bravo, E. Baratchart, J. West, R. Schenck, A. Miller, J. Gallaher, C. Gatenbee, D. Basanta, M. Robertson-Tessi, A. Anderson, 2020, "Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization." PLOS Computational Biology. (publication)


8

J. West, M. Dinh, J. Brown, J. Zhang, A. Anderson, R. Gatenby, 2020, "Multidrug cancer therapy in metastatic castrate-resistant prostate cancer: An evolution-based strategy." Clinical Cancer Research. (publication)


7

J. West, P.K. Newton, 2019, "Cellular interactions constrain tumor growth." Proceedings of the National Academy of Sciences. (publication)


6

J. West, M. Robertson-Tessi, K. Luddy, D. Park, D. Williamson, C. Harmon, H. Khong, J. Brown, A. Anderson, 2018, "The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory." Journal of Clinical Oncology: Clinical Cancer Informatics. (publication)(preprint)


5

J. West, Y. Ma, P.K. Newton, 2017, "Capitalizing on Competition: An Evolutionary Model of Competitive Release in Metastatic Castrate Resistant Prostate Cancer Treatment." Journal of Theoretical Biology. (publication)


4

J. West, P.K. Newton, 2017, "Chemotherapeutic dose scheduling based on tumor growth rates provides a case for low-dose metronomic high-entropy therapies." Cancer Research. (publication)(preprint)


3

J. West, Z. Hasnain, J. Mason, P.K. Newton, 2016, "The prisoner's dilemma as a cancer model." Convergent Science: Physical Oncology. (publication)


2

J. West, Z. Hasnain, P.K. Newton, 2016, "An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth." SIAM Review. (publication)


1

John-David Yoder, J. West, E. Baumgartner, M. Perrollaz, M. Seelinger, M. Robinson, 2013, "Experiments comparing precision of stereo-vision approaches for control of an industrial manipulator." Spring Tracts in Advanced Robotics. (publication)


Technical Reports

6

J. West, D. Park, C. Harmon, D. Williamson, P. Ashcroft, D. Maestrini, A. Ardaseva, R. Bravo, P. Sahoo, H. Khong, K. Luddy, M. Robertson-Tessi, 2017, "Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer." (preprint)


5

E. Kim, R. Schenck, J. West, W. Cross, V. Harris, J. McKenna, H. Cho, E. Coker, S. Lee-Kramer, K. Tsai, E. Flores, C. Gatenbee, 2017, "Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata." (preprint)


4

J. West, P.K. Newton, 2017, "Optimizing chemo-scheduling based on tumor growth rates." Mathematical Oncology Handbook. (preprint)


3

Y. Ma, J. West, P.K. Newton, 2017, "Competitive release in tumors." Mathematical Oncology Handbook. (preprint)


2

J. West, M. Hromatka, M. Holt, S. Biaz, 2012, "A Fuzzy Logic approach to collision avoidance in smart UAVs," Technical Report #CSSE12-05, Auburn University. (report on Research Gate)


1

J. West, P. Ling, P. Grewal, 2010, "Urban Food Production season extension techniques," Internship Program (ORIP) Technical Report.