Click here for pdf of full CV.

* indicates co-first authorship

Preprints

J. West, A. Anderson, 2020, "IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations." (preprint)


M. Damaghi, J. West,M. Robertson-Tessi, Liping Xu, M. Ferrall-Fairbanks, P. Stewart, E. Persi, B. Fridley, P. Altrock, R. Gatenby, P. Sims, A. Anderson, R. Gillies, 2020, "The Harsh Microenvironment in Early Breast Cancer Selects for a Warburg Phenotype." (preprint)


M. Strobl, J. West, J. Brown, R. Gatenby, P. Maini, A. Anderson, 2020, "Turnover modulates the need for a cost of resistance in adaptive therapy." (preprint)


C. Gatenbee, J. West*, M. Robertson-Tessi, A. Baker, N. Guljar, T. Graham, A. Anderson, 2018, "Macrophage-mediated immunoediting drives ductal carcinoma evolution: Space is the game changer." (preprint)


R. Schenck, E. Kim, R. Bravo, J. West, D. Shibata, A. Anderson, 2019, "How Homeostasis Limits Keratinocyte Evolution." (preprint)


J. West, R. Schenck, C. Gatenbee, M. Roberston-Tessi, A. Anderson, 2019 "Tissue structure accelerates evolution: premalignant sweeps precede neutral invasion." (preprint)


Publications

J. West, L. You, J. Zhang, R.A. Gatenby, J. Brown, P.K. Newton, A. Anderson, 2020, "Towards multi-drug adaptive therapy." Cancer Research. (publication)


R. Bravo, E. Baratchart, J. West, R. Schenck, A. Miller, J. Gallaher, C. Gatenbee, D. Basanta, M. Robertson-Tessi, A. Anderson, 2020, "Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization." PLOS Computational Biology. (publication)


J. West, M. Dinh, J. Brown, J. Zhang, A. Anderson, R. Gatenby, 2020, "Multidrug cancer therapy in metastatic castrate-resistant prostate cancer: An evolution-based strategy." Clinical Cancer Research. (publication)


J. West, P.K. Newton, 2019, "Cellular interactions constrain tumor growth." Proceedings of the National Academy of Sciences. (publication)


J. West, M. Robertson-Tessi, K. Luddy, D. Park, D. Williamson, C. Harmon, H. Khong, J. Brown, A. Anderson, 2018, "The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory." Journal of Clinical Oncology: Clinical Cancer Informatics. (publication)(preprint)


J. West, Y. Ma, P.K. Newton, 2017, "Capitalizing on Competition: An Evolutionary Model of Competitive Release in Metastatic Castrate Resistant Prostate Cancer Treatment." Journal of Theoretical Biology. (publication)


J. West, P.K. Newton, 2017, "Chemotherapeutic dose scheduling based on tumor growth rates provides a case for low-dose metronomic high-entropy therapies." Cancer Research. (publication)(preprint)


J. West, Z. Hasnain, J. Mason, P.K. Newton, 2016, "The prisoner's dilemma as a cancer model." Convergent Science: Physical Oncology. (publication)


J. West, Z. Hasnain, P.K. Newton, 2016, "An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth." SIAM Review. (publication)


John-David Yoder, J. West, E. Baumgartner, M. Perrollaz, M. Seelinger, M. Robinson, 2013, "Experiments comparing precision of stereo-vision approaches for control of an industrial manipulator." Spring Tracts in Advanced Robotics. (publication)


Technical Reports

J. West, D. Park, C. Harmon, D. Williamson, P. Ashcroft, D. Maestrini, A. Ardaseva, R. Bravo, P. Sahoo, H. Khong, K. Luddy, M. Robertson-Tessi, 2017, "Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer." (preprint)


E. Kim, R. Schenck, J. West, W. Cross, V. Harris, J. McKenna, H. Cho, E. Coker, S. Lee-Kramer, K. Tsai, E. Flores, C. Gatenbee, 2017, "Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata." (preprint)


J. West, P.K. Newton, 2017, "Optimizing chemo-scheduling based on tumor growth rates." Mathematical Oncology Handbook. (preprint)


Y. Ma, J. West, P.K. Newton, 2017, "Competitive release in tumors." Mathematical Oncology Handbook. (preprint)


J. West, M. Hromatka, M. Holt, S. Biaz, 2012, "A Fuzzy Logic approach to collision avoidance in smart UAVs," Technical Report #CSSE12-05, Auburn University. (report on Research Gate)


J. West, P. Ling, P. Grewal, 2010, "Urban Food Production season extension techniques," Internship Program (ORIP) Technical Report.